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Jun Fan
Jun Fan
Bestätigte E-Mail-Adresse bei qmul.ac.uk
Titel
Zitiert von
Zitiert von
Jahr
UniProt: the universal protein knowledgebase in 2023
Nucleic acids research 51 (D1), D523-D531, 2023
14172023
De novo derivation of proteomes from transcriptomes for transcript and protein identification
VC Evans, G Barker, KJ Heesom, J Fan, C Bessant, DA Matthews
Nature methods 9 (12), 1207-1211, 2012
1822012
The mzTab data exchange format: communicating mass-spectrometry-based proteomics and metabolomics experimental results to a wider audience
J Griss, AR Jones, T Sachsenberg, M Walzer, L Gatto, J Hartler, ...
Molecular & Cellular Proteomics 13 (10), 2765-2775, 2014
1442014
Identifying the important HIV-1 recombination breakpoints
J Archer, JW Pinney, J Fan, E Simon-Loriere, EJ Arts, M Negroni, ...
PLoS computational biology 4 (9), e1000178, 2008
872008
UniProt: the universal protein knowledgebase in 2023
A Bateman, MJ Martin, S Orchard, M Magrane, S Ahmad, E Alpi, ...
Nucleic acids research 51 (D 1), D523-D531, 2023
822023
Sequence determinants of breakpoint location during HIV-1 intersubtype recombination
HA Baird, R Galetto, Y Gao, E Simon-Loriere, M Abreha, J Archer, J Fan, ...
Nucleic acids research 34 (18), 5203-5216, 2006
742006
The mzquantml data standard for mass spectrometry–based quantitative studies in proteomics
M Walzer, D Qi, G Mayer, J Uszkoreit, M Eisenacher, T Sachsenberg, ...
Molecular & cellular proteomics 12 (8), 2332-2340, 2013
722013
A critical appraisal of techniques, software packages, and standards for quantitative proteomic analysis
FF Gonzalez-Galarza, C Lawless, SJ Hubbard, J Fan, C Bessant, ...
Omics: a journal of integrative biology 16 (9), 431-442, 2012
662012
Evidence of recombination between divergent hepatitis E viruses
H Van Cuyck, J Fan, DL Robertson, P Roques
Journal of virology 79 (14), 9306-9314, 2005
642005
The distribution of HIV-1 recombination breakpoints
J Fan, M Negroni, DL Robertson
Infection, Genetics and Evolution 7 (6), 717-723, 2007
602007
Proteomics informed by transcriptomics for characterising active transposable elements and genome annotation in Aedes aegypti
K Maringer, A Yousuf, KJ Heesom, J Fan, D Lee, A Fernandez-Sesma, ...
BMC genomics 18, 1-18, 2017
572017
Galaxy integrated omics: web-based standards-compliant workflows for proteomics informed by transcriptomics*[S]
J Fan, S Saha, G Barker, KJ Heesom, F Ghali, AR Jones, DA Matthews, ...
Molecular & Cellular Proteomics 14 (11), 3087-3093, 2015
392015
Open reading frame structure analysis as a novel genotyping tool for hepatitis E virus and the subsequent discovery of an inter-genotype recombinant
J Fan
Journal of general virology 90 (6), 1353-1358, 2009
242009
MRMaid: The SRM Assay Design Tool for Arabidopsis and Other Species
J Fan, F Mohareb, AME Jones, C Bessant
Frontiers in Plant Science 3, 164, 2012
192012
MRMaid 2.0: mining PRIDE for evidence-based SRM transitions
J Fan, F Mohareb, NJ Bond, KS Lilley, C Bessant
Omics: a journal of integrative biology 16 (9), 483-488, 2012
152012
A tutorial for software development in quantitative proteomics using PSI standard formats
FF Gonzalez-Galarza, D Qi, J Fan, C Bessant, AR Jones
Biochimica et Biophysica Acta (BBA)-Proteins and Proteomics 1844 (1), 88-97, 2014
72014
The mzqLibrary–An open source Java library supporting the HUPO‐PSI quantitative proteomics standard
D Qi, H Zhang, J Fan, S Perkins, A Pisconti, DM Simpson, C Bessant, ...
Proteomics 15 (18), 3152-3162, 2015
52015
UniProt and Mass Spectrometry-Based Proteomics—A 2-Way Working Relationship
EH Bowler-Barnett, J Fan, J Luo, M Magrane, MJ Martin, S Orchard
Molecular & Cellular Proteomics 22 (8), 2023
12023
Computational approaches to selected reaction monitoring assay design
C Bessant, J Fan
Mass Spectrometry Data Analysis in Proteomics, 219-235, 2013
12013
A meta-analysis of rice phosphoproteomics data to understand variation in cell signalling across the rice pan-genome
KA Ramsbottom, A Prakash, YP Riverol, OM Camacho, Z Sun, DJ Kundu, ...
bioRxiv, 2023
2023
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