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Diego A Oyarzún
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Mechanistic links between cellular trade-offs, gene expression, and growth
AY Weiße, DA Oyarzún, V Danos, PS Swain
Proceedings of the National Academy of Sciences 112 (9), E1038-E1047, 2015
4272015
Cascaded multilevel inverter with regeneration capability and reduced number of switches
P Lezana, J Rodríguez, DA Oyarzún
IEEE Transactions on Industrial Electronics 55 (3), 1059-1066, 2008
3142008
Fundamental design principles for transcription-factor-based metabolite biosensors
AA Mannan, D Liu, F Zhang, DA Oyarzún
ACS synthetic biology 6 (10), 1851-1859, 2017
1982017
Pathways to cellular supremacy in biocomputing
L Grozinger, M Amos, TE Gorochowski, P Carbonell, DA Oyarzún, R Stoof, ...
Nature communications 10 (1), 5250, 2019
1602019
The power of synthetic biology for bioproduction, remediation and pollution control
V Lorenzo, KL Prather, G Chen, E O’Day, C Kameke, DA Oyarzún, ...
EMBO Rep 19 (4), 4-9, 2018
119*2018
Dynamic optimization of metabolic networks coupled with gene expression
S Waldherr, DA Oyarzún, A Bockmayr
Journal of theoretical biology 365, 469-485, 2015
1152015
Dynamic metabolic control: towards precision engineering of metabolism
D Liu, AA Mannan, Y Han, DA Oyarzún, F Zhang
Journal of Industrial Microbiology and Biotechnology 45 (7), 535-543, 2018
1072018
Noise propagation in synthetic gene circuits for metabolic control
DA Oyarzún, JB Lugagne, GBV Stan
ACS synthetic biology 4 (2), 116-125, 2015
842015
Synthetic gene circuits for metabolic control: design trade-offs and constraints
DA Oyarzún, GBV Stan
Journal of The Royal Society Interface 10 (78), 20120671, 2013
792013
Growth defects and loss-of-function in synthetic gene circuits
EM Nikolados, AY Weiße, F Ceroni, DA Oyarzún
ACS synthetic biology 8 (6), 1231-1240, 2019
742019
Sequential activation of metabolic pathways: a dynamic optimization approach
DA Oyarzún, BP Ingalls, RH Middleton, D Kalamatianos
Bulletin of mathematical biology 71 (8), 1851-1872, 2009
552009
Discovery of senolytics using machine learning
V Smer-Barreto, A Quintanilla, RJR Elliott, JC Dawson, J Sun, VM Campa, ...
Nature Communications 14 (1), 3445, 2023
502023
A stochastic model of gene expression with polymerase recruitment and pause release
Z Cao, T Filatova, DA Oyarzún, R Grima
Biophysical Journal 119 (5), 1002-1014, 2020
50*2020
Stochastic modelling reveals mechanisms of metabolic heterogeneity
MK Tonn, P Thomas, M Barahona, DA Oyarzún
Communications biology 2 (1), 108, 2019
502019
Accuracy and data efficiency in deep learning models of protein expression
EM Nikolados, A Wongprommoon, OM Aodha, G Cambray, DA Oyarzún
Nature Communications 13 (1), 1-12, 2022
452022
Flux-dependent graphs for metabolic networks
M Beguerisse-Díaz, G Bosque, D Oyarzún, J Picó, M Barahona
NPJ systems biology and applications 4 (1), 32, 2018
412018
Shaping Pulses to Control Bistable Systems: Analysis, Computation and Counterexamples
A Sootla, DA Oyarzun, D Angeli, GB Stan
Automatica 63, 254-264, 2016
382016
Multistability and oscillations in genetic control of metabolism
DA Oyarzún, M Chaves, M Hoff-Hoffmeyer-Zlotnik
Journal of Theoretical Biology 295, 139-153, 2012
352012
Microbial polysaccharides: An emerging family of natural biomaterials for cancer therapy and diagnostics
VK Sharma, X Liu, DA Oyarzún, AM Abdel-Azeem, AG Atanasov, ...
Seminars in Cancer Biology 86, 706-731, 2022
322022
Design of a bistable switch to control cellular uptake
DA Oyarzún, M Chaves
Journal of The Royal Society Interface 12 (113), 20150618, 2015
322015
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