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Jakob Wirbel
Jakob Wirbel
Postdoctoral Fellow, Stanford School of Medicine
Bestätigte E-Mail-Adresse bei stanford.edu - Startseite
Titel
Zitiert von
Zitiert von
Jahr
Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific for colorectal cancer
J Wirbel, PT Pyl, E Kartal, K Zych, A Kashani, A Milanese, JS Fleck, ...
Nature medicine 25 (4), 679-689, 2019
8402019
Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation
AM Thomas, P Manghi, F Asnicar, E Pasolli, F Armanini, M Zolfo, ...
Nature medicine 25 (4), 667-678, 2019
6612019
Extensive transmission of microbes along the gastrointestinal tract
TSB Schmidt, MR Hayward, LP Coelho, SS Li, PI Costea, AY Voigt, ...
eLife 8, e42693, 2019
3672019
Unravelling the collateral damage of antibiotics on gut bacteria
L Maier, CV Goemans, J Wirbel, M Kuhn, C Eberl, M Pruteanu, P Müller, ...
Nature 599 (7883), 120-124, 2021
1902021
Microbiome meta-analysis and cross-disease comparison enabled by the SIAMCAT machine learning toolbox
J Wirbel, K Zych, M Essex, N Karcher, E Kartal, G Salazar, P Bork, ...
Genome Biology 22 (1), 1-27, 2021
1412021
A faecal microbiota signature with high specificity for pancreatic cancer
E Kartal, TSB Schmidt, E Molina-Montes, S Rodríguez-Perales, J Wirbel, ...
Gut 71 (7), 1359-1372, 2022
1242022
Identifying temporal and spatial patterns of variation from multimodal data using MEFISTO
B Velten, JM Braunger, R Argelaguet, D Arnol, J Wirbel, D Bredikhin, ...
Nature methods 19 (2), 179-186, 2022
872022
Commensal Clostridiales strains mediate effective anti-cancer immune response against solid tumors
A Montalban-Arques, E Katkeviciute, P Busenhart, A Bircher, J Wirbel, ...
Cell Host & Microbe 29 (10), 1573-1588. e7, 2021
832021
Metabolic models predict bacterial passengers in colorectal cancer
DR Garza, R Taddese, J Wirbel, G Zeller, A Boleij, MA Huynen, BE Dutilh
Cancer & metabolism 8, 1-13, 2020
382020
Phosphoproteomics-based profiling of kinase activities in cancer cells
J Wirbel, P Cutillas, J Saez-Rodriguez
Cancer Systems Biology: Methods and Protocols, 103-132, 2018
352018
Cultivation-independent genomes greatly expand taxonomic-profiling capabilities of mOTUs across various environments
HJ Ruscheweyh, A Milanese, L Paoli, N Karcher, Q Clayssen, MI Keller, ...
Microbiome 10 (1), 1-12, 2022
252022
Calorie restriction improves metabolic state independently of gut microbiome composition: a randomized dietary intervention trial
SA Sowah, A Milanese, R Schübel, J Wirbel, E Kartal, TS Johnson, ...
Genome Medicine 14 (1), 1-21, 2022
252022
Depression and fatigue in active IBD from a microbiome perspective—a Bayesian approach to faecal metagenomics
AK Thomann, T Wüstenberg, J Wirbel, LL Knoedler, PA Thomann, ...
BMC medicine 20 (1), 1-17, 2022
182022
Microbiota-dependent activation of the myeloid calcineurin-NFAT pathway inhibits B7H3-and B7H4-dependent anti-tumor immunity in colorectal cancer
K Peuker, A Strigli, DVF Tauriello, A Hendricks, W von Schönfels, ...
Immunity 55 (4), 701-717. e7, 2022
182022
Dissecting the collateral damage of antibiotics on gut microbes
L Maier, CV Goemans, M Pruteanu, J Wirbel, M Kuhn, E Cacace, ...
BioRxiv, 2020.01. 09.893560, 2020
132020
SIAMCAT: user-friendly and versatile machine learning workflows for statistically rigorous microbiome analyses
J Wirbel, K Zych, M Essex, N Karcher, E Kartal, G Salazar, P Bork, ...
bioRxiv, 931808, 2020
122020
Prediction of combination therapies based on topological modeling of the immune signaling network in Multiple Sclerosis
M Bernardo-Faura, M Rinas, J Wirbel, I Pertsovskaya, V Pliaka, ...
Genome Medicine 13 (1), 1-16, 2021
112021
C. difficile may be overdiagnosed in adults and is a prevalent commensal in infants
P Ferretti, J Wirbel, OM Maistrenko, T Van Rossum, R Alves, A Fullam, ...
eLife 12, 2023
32023
Intragenic DNA inversions expand bacterial coding capacity
RB Chanin, PT West, RM Park, J Wirbel, GZM Green, AM Miklos, MO Gill, ...
bioRxiv, 2023.03. 11.532203, 2023
32023
Reference genome-independent taxonomic profiling of microbiomes with mOTUs3
HJ Ruscheweyh, A Milanese, L Paoli, N Karcher, Q Clayssen, MI Metzger, ...
bioRxiv, 2021.04. 20.440600, 2021
32021
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