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Jordi Solana
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PAGA: graph abstraction reconciles clustering with trajectory inference through a topology preserving map of single cells
FA Wolf, FK Hamey, M Plass, J Solana, JS Dahlin, B Göttgens, ...
Genome biology 20, 1-9, 2019
11232019
Cell type atlas and lineage tree of a whole complex animal by single-cell transcriptomics
M Plass, J Solana, FA Wolf, S Ayoub, A Misios, P Glažar, B Obermayer, ...
Science 360 (6391), eaaq1723, 2018
4622018
Gene expression of pluripotency determinants is conserved between mammalian and planarian stem cells
P Önal, D Grün, C Adamidi, A Rybak, J Solana, G Mastrobuoni, Y Wang, ...
The EMBO journal 31 (12), 2755-2769, 2012
1752012
Defining the molecular profile of planarian pluripotent stem cells using a combinatorial RNA-seq, RNA interference and irradiation approach
J Solana, D Kao, Y Mihaylova, F Jaber-Hijazi, S Malla, R Wilson, ...
Genome biology 13, 1-23, 2012
1702012
Closing the circle of germline and stem cells: the Primordial Stem Cell hypothesis
J Solana
EvoDevo 4, 1-17, 2013
1082013
Spoltud-1 is a chromatoid body component required for planarian long-term stem cell self-renewal
J Solana, P Lasko, R Romero
Developmental biology 328 (2), 410-421, 2009
992009
Gö ttgens, B., Rajewsky, N., Simon, L., and Theis, FJ (2019). PAGA: graph abstraction reconciles clustering with trajectory inference through a topology preserving map of …
FA Wolf, FK Hamey, M Plass, J Solana, JS Dahlin
Genome Biol 20 (59), 100-11, 0
72
Conserved functional antagonism of CELF and MBNL proteins controls stem cell-specific alternative splicing in planarians
J Solana, M Irimia, S Ayoub, MR Orejuela, V Zywitza, M Jens, J Tapial, ...
Elife 5, e16797, 2016
572016
ACME dissociation: a versatile cell fixation-dissociation method for single-cell transcriptomics
H García-Castro, NJ Kenny, M Iglesias, P Álvarez-Campos, V Mason, ...
Genome biology 22, 1-34, 2021
562021
Planarian MBD2/3 is required for adult stem cell pluripotency independently of DNA methylation
F Jaber-Hijazi, PJKP Lo, Y Mihaylova, JM Foster, JS Benner, BT Romero, ...
Developmental biology 384 (1), 141-153, 2013
362013
An in situ hybridization protocol for planarian embryos: monitoring myosin heavy chain gene expression
A Cardona, J Fernández, J Solana, R Romero
Development genes and evolution 215, 482-488, 2005
362005
The CCR4-NOT complex mediates deadenylation and degradation of stem cell mRNAs and promotes planarian stem cell differentiation
J Solana, C Gamberi, Y Mihaylova, S Grosswendt, C Chen, P Lasko, ...
PLoS Genetics 9 (12), e1004003, 2013
332013
SpolvlgA is a DDX3/PL10-related DEAD-box RNA helicase expressed in blastomeres and embryonic cells in planarian embryonic development
J Solana, R Romero
International journal of biological sciences 5 (1), 64, 2009
272009
The Integrator complex regulates differential snRNA processing and fate of adult stem cells in the highly regenerative planarian Schmidtea mediterranea
D Schmidt, H Reuter, K Hüttner, L Ruhe, F Rabert, F Seebeck, M Irimia, ...
PLoS genetics 14 (12), e1007828, 2018
192018
Post-transcriptional regulation in planarian stem cells
S Krishna, D Palakodeti, J Solana
Seminars in Cell & Developmental Biology 87, 69-78, 2019
172019
Graph abstraction reconciles clustering with trajectory inference through a topology preserving map of single cells. bioRxiv
FA Wolf, F Hamey, M Plass, J Solana, JS Dahlin, B Gottgens, N Rajewsky, ...
October, 2017
15*2017
An atlas of spider development at single-cell resolution provides new insights into arthropod embryogenesis
DJ Leite, A Schönauer, G Blakeley, A Harper, H Garcia-Castro, ...
EvoDevo 15 (1), 5, 2024
122024
Annelid adult cell type diversity and their pluripotent cellular origins
P Álvarez-Campos, H García-Castro, E Emili, A Pérez-Posada, I Del Olmo, ...
Nature Communications 15 (1), 3194, 2024
92024
Single-cell transcriptomics in planaria: new tools allow new insights into cellular and evolutionary features
H García-Castro, J Solana
Biochemical Society Transactions 50 (5), 1237-1246, 2022
72022
RNA in situ hybridization on planarian paraffin sections
J Solana
Planarian Regeneration: Methods and Protocols, 393-404, 2018
72018
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