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Pelin Sahlén
Pelin Sahlén
Royal Institute of Technology
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Jahr
Visualization and analysis of gene expression in tissue sections by spatial transcriptomics
PL Ståhl, F Salmén, S Vickovic, A Lundmark, JF Navarro, J Magnusson, ...
Science 353 (6294), 78-82, 2016
24362016
Small-world communication of residues and significance for protein dynamics
AR Atilgan, P Akan, C Baysal
Biophysical journal 86 (1), 85-91, 2004
3842004
Integrated Genetic and Epigenetic Analysis Identifies Haplotype-Specific Methylation in the FTO Type 2 Diabetes and Obesity Susceptibility Locus
CG Bell, S Finer, CM Lindgren, GA Wilson, VK Rakyan, AE Teschendorff, ...
PloS one 5 (11), e14040, 2010
3402010
Genome-wide mapping of promoter-anchored interactions with close to single-enhancer resolution
P Sahlén, I Abdullayev, D Ramsköld, L Matskova, N Rilakovic, B Lötstedt, ...
Genome biology 16, 1-13, 2015
1462015
DNA sequence and structural properties as predictors of human and mouse promoters
P Akan, P Deloukas
Gene 410 (1), 165-176, 2008
562008
TagGD: fast and accurate software for DNA Tag generation and demultiplexing
PI Costea, J Lundeberg, P Akan
PLoS One 8 (3), e57521, 2013
512013
Comprehensive analysis of the genome transcriptome and proteome landscapes of three tumor cell lines
P Akan, A Alexeyenko, PI Costea, L Hedberg, BW Solnestam, S Lundin, ...
Genome medicine 4, 1-13, 2012
502012
Multiplex PCB-based electrochemical detection of cancer biomarkers using MLPA-barcode approach
JLA Sánchez, OYF Henry, H Joda, BW Solnestam, L Kvastad, ...
Biosensors and Bioelectronics 82, 224-232, 2016
452016
Comparison of total and cytoplasmic mRNA reveals global regulation by nuclear retention and miRNAs
BW Solnestam, H Stranneheim, J Hällman, M Käller, E Lundberg, ...
BMC genomics 13, 1-9, 2012
452012
SNP allele frequency estimation in DNA pools and variance components analysis
K Downes, BJ Barratt, P Akan, SJ Bumpstead, SD Taylor, DG Clayton, ...
Biotechniques 36 (5), 840-845, 2004
432004
The BAF and PRC2 complex subunits Dpf2 and Eed antagonistically converge on Tbx3 to control ESC differentiation
W Zhang, C Chronis, X Chen, H Zhang, R Spalinskas, M Pardo, L Chen, ...
Cell Stem Cell 24 (1), 138-152. e8, 2019
382019
Current challenges in understanding the role of enhancers in disease
JB Zaugg, P Sahlén, R Andersson, M Alberich-Jorda, W de Laat, ...
Nature structural & molecular biology 29 (12), 1148-1158, 2022
352022
Linkage disequilibrium mapping of the replicated type 2 diabetes linkage signal on chromosome 1q
I Prokopenko, E Zeggini, RL Hanson, BD Mitchell, NW Rayner, P Akan, ...
Diabetes 58 (7), 1704-1709, 2009
342009
A multi-omics approach to liver diseases: integration of single nuclei transcriptomics with proteomics and HiCap bulk data in human liver
M Cavalli, K Diamanti, G Pan, R Spalinskas, C Kumar, AS Deshmukh, ...
Omics: a journal of integrative biology 24 (4), 180-194, 2020
302020
Allele specific chromatin signals, 3D interactions, and motif predictions for immune and B cell related diseases
M Cavalli, N Baltzer, HM Umer, J Grau, I Lemnian, G Pan, O Wallerman, ...
Scientific reports 9 (1), 2695, 2019
282019
Interpretation, stratification and evidence for sequence variants affecting mRNA splicing in complete human genome sequences
BC Shirley, EJ Mucaki, T Whitehead, PI Costea, P Akan, PK Rogan
Genomics, Proteomics and Bioinformatics 11 (2), 77-85, 2013
282013
HiCapTools: a software suite for probe design and proximity detection for targeted chromosome conformation capture applications
A Anil, R Spalinskas, Ö Åkerborg, P Sahlen
Bioinformatics 34 (4), 675-677, 2018
252018
Single cell analysis of cancer cells using an improved RT-MLPA method has potential for cancer diagnosis and monitoring
L Kvastad, B Werne Solnestam, E Johansson, AO Nygren, N Laddach, ...
Scientific Reports 5 (1), 16519, 2015
232015
Chromatin interactions in differentiating keratinocytes reveal novel atopic dermatitis–and psoriasis-associated genes
P Sahlén, R Spalinskas, S Asad, KD Mahapatra, P Höjer, A Anil, J Eisfeldt, ...
Journal of Allergy and Clinical Immunology 147 (5), 1742-1752, 2021
192021
Electrochemical genetic profiling of single cancer cells
JL Acero Sanchez, H Joda, OYF Henry, BW Solnestam, L Kvastad, ...
Analytical chemistry 89 (6), 3378-3385, 2017
182017
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