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Andrew Jones
Andrew Jones
Department of Biochemistry and Systems Biology, ISMIB, University of Liverpool
Bestätigte E-Mail-Adresse bei liverpool.ac.uk
Titel
Zitiert von
Zitiert von
Jahr
ProteomeXchange provides globally coordinated proteomics data submission and dissemination
JA Vizcaíno, EW Deutsch, R Wang, A Csordas, F Reisinger, D Ríos, ...
Nature biotechnology 32 (3), 223-226, 2014
26642014
Allele frequency net: a database and online repository for immune gene frequencies in worldwide populations
FF Gonzalez-Galarza, S Christmas, D Middleton, AR Jones
Nucleic acids research 39 (suppl_1), D913-D919, 2010
8552010
Allele frequency net 2015 update: new features for HLA epitopes, KIR and disease and HLA adverse drug reaction associations
FF González-Galarza, LYC Takeshita, EJM Santos, F Kempson, ...
Nucleic acids research 43 (D1), D784-D788, 2015
8182015
The minimum information about a proteomics experiment (MIAPE)
CF Taylor, NW Paton, KS Lilley, PA Binz, RK Julian Jr, AR Jones, W Zhu, ...
Nature biotechnology 25 (8), 887-893, 2007
8032007
Allele frequency net database (AFND) 2020 update: gold-standard data classification, open access genotype data and new query tools
FF Gonzalez-Galarza, A McCabe, EJM Santos, J Jones, L Takeshita, ...
Nucleic acids research 48 (D1), D783-D788, 2020
5312020
VEuPathDB: the eukaryotic pathogen, vector and host bioinformatics resource center
B Amos, C Aurrecoechea, M Barba, A Barreto, EY Basenko, R Belnap, ...
Nucleic Acids Research 50 (D1), D898-D911, 2022
2872022
The mzIdentML data standard for mass spectrometry-based proteomics results
AR Jones, M Eisenacher, G Mayer, O Kohlbacher, J Siepen, SJ Hubbard, ...
Molecular & Cellular Proteomics 11 (7), M111. 014381-1-M111. 014381-10, 2012
2202012
The proteome of Toxoplasma gondii: integration with the genome provides novel insights into gene expression and annotation
D Xia, SJ Sanderson, AR Jones, JH Prieto, JR Yates, E Bromley, ...
Genome biology 9, 1-18, 2008
1512008
Strong anion exchange‐mediated phosphoproteomics reveals extensive human non‐canonical phosphorylation
G Hardman, S Perkins, PJ Brownridge, CJ Clarke, DP Byrne, ...
The EMBO journal 38 (21), e100847, 2019
1442019
The mzTab data exchange format: communicating mass-spectrometry-based proteomics and metabolomics experimental results to a wider audience
J Griss, AR Jones, T Sachsenberg, M Walzer, L Gatto, J Hartler, ...
Molecular & Cellular Proteomics 13 (10), 2765-2775, 2014
1442014
Modulation of the Host Cell Proteome by the Intracellular Apicomplexan Parasite Toxoplasma gondii
MM Nelson, AR Jones, JC Carmen, AP Sinai, R Burchmore, JM Wastling
Infection and immunity 76 (2), 828-844, 2008
1372008
The Functional Genomics Experiment model (FuGE): an extensible framework for standards in functional genomics
AR Jones, M Miller, R Aebersold, R Apweiler, CA Ball, A Brazma, ...
Nature Biotechnology 25 (10), 1127-1133, 2007
1322007
Improving sensitivity in proteome studies by analysis of false discovery rates for multiple search engines
AR Jones, JA Siepen, SJ Hubbard, NW Paton
Proteomics 9 (5), 1220-1229, 2009
1172009
Allele frequencies net database: improvements for storage of individual genotypes and analysis of existing data
EJM Dos Santos, A McCabe, FF Gonzalez-Galarza, AR Jones, ...
Human immunology 77 (3), 238-248, 2016
1052016
The HUPO proteomics standards initiative-mass spectrometry controlled vocabulary
G Mayer, L Montecchi-Palazzi, D Ovelleiro, AR Jones, PA Binz, ...
Database 2013, bat009, 2013
992013
Proteomics standards initiative: fifteen years of progress and future work
EW Deutsch, S Orchard, PA Binz, W Bittremieux, M Eisenacher, ...
Journal of proteome research 16 (12), 4288-4298, 2017
882017
Characterising proteolysis during SARS-CoV-2 infection identifies viral cleavage sites and cellular targets with therapeutic potential
B Meyer, J Chiaravalli, S Gellenoncourt, P Brownridge, DP Bryne, LA Daly, ...
Nature communications 12 (1), 5553, 2021
852021
In silicoanalysis of HLA associations with drug-induced liver injury: use of a HLA-genotyped DNA archive from healthy volunteers
A Alfirevic, F Gonzalez-Galarza, C Bell, K Martinsson, V Platt, G Bretland, ...
Genome medicine 4, 1-14, 2012
842012
Development of data representation standards by the human proteome organization proteomics standards initiative
EW Deutsch, JP Albar, PA Binz, M Eisenacher, AR Jones, G Mayer, ...
Journal of the American medical informatics association 22 (3), 495-506, 2015
722015
The mzquantml data standard for mass spectrometry–based quantitative studies in proteomics
M Walzer, D Qi, G Mayer, J Uszkoreit, M Eisenacher, T Sachsenberg, ...
Molecular & cellular proteomics 12 (8), 2332-2340, 2013
722013
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