| Meta-analysis of the Alzheimer’s disease human brain transcriptome and functional dissection in mouse models YW Wan, R Al-Ouran, CG Mangleburg, TM Perumal, TV Lee, K Allison, ... Cell reports 32 (2), 2020 | 235 | 2020 |
| KnetMiner: a comprehensive approach for supporting evidence‐based gene discovery and complex trait analysis across species K Hassani‐Pak, A Singh, M Brandizi, J Hearnshaw, JD Parsons, ... Plant Biotechnology Journal 19 (8), 1670-1678, 2021 | 88 | 2021 |
| Whole‐genome sequencing reveals new Alzheimer's disease–associated rare variants in loci related to synaptic function and neuronal development D Prokopenko, SL Morgan, K Mullin, O Hofmann, B Chapman, R Kirchner, ... Alzheimer's & Dementia 17 (9), 1509-1527, 2021 | 74 | 2021 |
| Rif2 promotes a telomere fold-back structure through Rpd3L recruitment in budding yeast H Poschke, M Dees, M Chang, S Amberkar, L Kaderali, R Rothstein, ... Public Library of Science 8 (9), e1002960, 2012 | 44 | 2012 |
| Meta-analysis of the human brain transcriptome identifies heterogeneity across human AD coexpression modules robust to sample collection and methodological approach BA Logsdon, TM Perumal, V Swarup, M Wang, C Funk, C Gaiteri, M Allen, ... BioRxiv, 510420, 2019 | 43 | 2019 |
| High-throughput RNA interference screens integrative analysis: Towards a comprehensive understanding of the virus-host interplay S Amberkar, NA Kiani, R Bartenschlager, L Kaderali World Journal of Virology 2 (2), 2013 | 27 | 2013 |
| Accelerating medicines partnership-Alzheimer’s disease consortium YW Wan, R Al-Ouran, CG Mangleburg, TM Perumal, TV Lee, K Allison, ... Carter GW, Collier DA, Golde TE, Levey AI, Bennett DA, Estrada K, Townsend …, 2020 | 14 | 2020 |
| An integrative approach for a network based meta-analysis of viral RNAi screens S Amberkar, L Kaderali Algorithms for Molecular Biology 10 (6), 2015 | 9 | 2015 |
| Diffcoexp: differential coexpression analysis W Wei, S Amberkar, W Hide R package version 1 (0), 2022 | 5 | 2022 |
| KnetMiner: a comprehensive approach for supporting evidence-based gene discovery and complex trait analysis across species [Internet]. bioRxiv. 2020 [cited 2020 Jul 22]. p … K Hassani-Pak, A Singh, M Brandizi, J Hearnshaw, S Amberkar, ... Publisher Full Text, 0 | 5 | |
| GET_PANGENES: calling pangenes from plant genome alignments confirms presence-absence variation B Contreras-Moreira, S Saraf, G Naamati, AM Casas, SS Amberkar, ... Genome Biology 24 (1), 223, 2023 | 3 | 2023 |
| KnetMiner-Intelligent search and visualisation of connected data to explain complex traits and diseases K Hassani-Pak, A Singh, M Brandizi, J Hearnshaw, S Amberkar, ... BioRxiv, 2020.04. 02.017004, 2020 | 3 | 2020 |
| Detecting Non-Uniform Clusters in Large-Scale Interaction Graphs N Levtov, S Amberkar, ZM Frenkel, L Kaderali, Z Volkovich Journal of Computational Biology 21 (2), 173-183, 2014 | 2 | 2014 |
| Novel molecules and target genes for vegetative heat tolerance in wheat T Rose, M Wilkinson, C Lowe, J Xu, D Hughes, KL Hassall, ... Plant‐Environment Interactions 3 (6), 264-289, 2022 | 1 | 2022 |
| P4‐031: Integrative Network Analysis of Multiple Alzheimer's Disease Rnaseq Studies From the Accelerating Medicine Partnership‐Alzheimer's Disease Consortium BA Logsdon, B Zhang, V Komashko, S Mostafavi, M Chen, TM Perumal, ... Alzheimer's & Dementia 12, P1026-P1027, 2016 | 1 | 2016 |
| Building pangene sets from plant genome alignments confirms presence-absence variation B Contreras-Moreira, S Saraf, G Naamati, SS Amberkar, P Flicek, ... bioRxiv, 2023.01. 03.520531, 2023 | | 2023 |
| Package ‘diffcoexp’ W Wei, S Amberkar, W Hide, MW Wei, S GEOquery, ... | | 2018 |
| Repeated Bisections Approach for Local Clustering of PPINs Z Frenkel, S Amberkar, L Kaderali, Z Volkovich Journal of Modern Mathematics Frontier Volume 2 (1), 2013 | | 2013 |
| A comparative functional RNA-interference screen identifies factors differentially required for lipid droplet homeostasis and life cycle of Flaviviridae members G Alvisi, IK Stoeck, S Amberkar, NA Kiani, C Sommer, W Fischl, ... 41° Congresso Nazionale della SocietÀ Italiana di Microbiologia, 2013 | | 2013 |
