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Andrey Alexeyenko
Andrey Alexeyenko
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Zitiert von
Jahr
The Norway spruce genome sequence and conifer genome evolution
B Nystedt, NR Street, A Wetterbom, A Zuccolo, YC Lin, DG Scofield, ...
Nature 497 (7451), 579-584, 2013
15602013
High-throughput in vivo analysis of gene expression in Caenorhabditis elegans
R Hunt-Newbury, R Viveiros, R Johnsen, A Mah, D Anastas, L Fang, ...
PLoS biology 5 (9), e237, 2007
4892007
Automatic clustering of orthologs and inparalogs shared by multiple proteomes
A Alexeyenko, I Tamas, G Liu, ELL Sonnhammer
Bioinformatics 22 (14), e9-e15, 2006
3112006
Global networks of functional coupling in eukaryotes from comprehensive data integration
A Alexeyenko, ELL Sonnhammer
Genome research 19 (6), 1107-1116, 2009
1892009
Spatially resolved transcriptome profiling in model plant species
S Giacomello, F Salmén, BK Terebieniec, S Vickovic, JF Navarro, ...
Nature plants 3 (6), 1-11, 2017
1592017
Network enrichment analysis: extension of gene-set enrichment analysis to gene networks
A Alexeyenko, W Lee, M Pernemalm, J Guegan, P Dessen, V Lazar, ...
BMC bioinformatics 13, 1-11, 2012
1492012
An international effort towards developing standards for best practices in analysis, interpretation and reporting of clinical genome sequencing results in the CLARITY Challenge
CA Brownstein, AH Beggs, N Homer, B Merriman, TW Yu, KC Flannery, ...
Genome biology 15, 1-18, 2014
1222014
Inhibition of tumor cell proliferation and motility by fibroblasts is both contact and soluble factor dependent
T Alkasalias, E Flaberg, V Kashuba, A Alexeyenko, T Pavlova, ...
Proceedings of the National Academy of Sciences 111 (48), 17188-17193, 2014
1082014
Distinguishing between driver and passenger mutations in individual cancer genomes by network enrichment analysis
SK Merid, D Goranskaya, A Alexeyenko
BMC bioinformatics 15, 1-21, 2014
822014
Expression of scavenger receptor MARCO defines a targetable tumor‐associated macrophage subset in non‐small cell lung cancer
L La Fleur, VF Boura, A Alexeyenko, A Berglund, V Pontén, JSM Mattsson, ...
International Journal of Cancer 143 (7), 1741-1752, 2018
812018
Comparative interactomics with Funcoup 2.0
A Alexeyenko, T Schmitt, A Tjärnberg, D Guala, O Frings, ...
Nucleic acids research 40 (D1), D821-D828, 2012
672012
Analysis of lipid pathway genes indicates association of sequence variation near SREBF1/TOM1L2/ATPAF2 with dementia risk
CA Reynolds, MG Hong, UK Eriksson, K Blennow, F Wiklund, ...
Human molecular genetics 19 (10), 2068-2078, 2010
642010
Identification of novel epigenetic markers of prostate cancer by NotI‐microarray analysis
AA Dmitriev, EE Rosenberg, GS Krasnov, GV Gerashchenko, ...
Disease markers 2015 (1), 241301, 2015
592015
Dynamic zebrafish interactome reveals transcriptional mechanisms of dioxin toxicity
A Alexeyenko, DM Wassenberg, EK Lobenhofer, J Yen, E Linney, ...
PloS one 5 (5), e10465, 2010
582010
Genome-wide pathway analysis implicates intracellular transmembrane protein transport in Alzheimer disease
MG Hong, A Alexeyenko, JC Lambert, P Amouyel, JA Prince
Journal of human genetics 55 (10), 707-709, 2010
562010
Statistical assessment of crosstalk enrichment between gene groups in biological networks
T McCormack, O Frings, A Alexeyenko, ELL Sonnhammer
PloS one 8 (1), e54945, 2013
502013
Comprehensive analysis of the genome transcriptome and proteome landscapes of three tumor cell lines
P Akan, A Alexeyenko, PI Costea, L Hedberg, BW Solnestam, S Lundin, ...
Genome medicine 4, 1-13, 2012
502012
Novel genes and pathways modulated by syndecan-1: implications for the proliferation and cell-cycle regulation of malignant mesothelioma cells
T Szatmári, F Mundt, G Heidari-Hamedani, F Zong, E Ferolla, ...
PloS one 7 (10), e48091, 2012
482012
Overview and comparison of ortholog databases
A Alexeyenko, J Lindberg, Å Pérez-Bercoff, ELL Sonnhammer
Drug Discovery Today: Technologies 3 (2), 137-143, 2006
402006
RhoA knockout fibroblasts lose tumor-inhibitory capacity in vitro and promote tumor growth in vivo
T Alkasalias, A Alexeyenko, K Hennig, F Danielsson, RJ Lebbink, ...
Proceedings of the National Academy of Sciences 114 (8), E1413-E1421, 2017
382017
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