A review on parallel virtual screening softwares for high-performance computers NA Murugan, A Podobas, D Gadioli, E Vitali, G Palermo, S Markidis Pharmaceuticals 15 (1), 63, 2022 | 60 | 2022 |
Margot: a dynamic autotuning framework for self-aware approximate computing D Gadioli, E Vitali, G Palermo, C Silvano IEEE transactions on computers 68 (5), 713-728, 2018 | 36 | 2018 |
Exploiting OpenMP and OpenACC to accelerate a geometric approach to molecular docking in heterogeneous HPC nodes E Vitali, D Gadioli, G Palermo, A Beccari, C Cavazzoni, C Silvano The Journal of Supercomputing 75, 3374-3396, 2019 | 27 | 2019 |
GPU-optimized approaches to molecular docking-based virtual screening in drug discovery: A comparative analysis E Vitali, F Ficarelli, M Bisson, D Gadioli, G Accordi, M Fatica, AR Beccari, ... Journal of Parallel and Distributed Computing 186, 104819, 2024 | 20 | 2024 |
An efficient monte carlo-based probabilistic time-dependent routing calculation targeting a server-side car navigation system E Vitali, D Gadioli, G Palermo, M Golasowski, J Bispo, P Pinto, ... IEEE transactions on emerging topics in computing 9 (2), 1006-1019, 2019 | 19 | 2019 |
CONTREX: Design of embedded mixed-criticality CONTRol systems under consideration of EXtra-functional properties K Grüttner, R Görgen, S Schreiner, F Herrera, P Peñil, J Medina, E Villar, ... Microprocessors and Microsystems 51, 39-55, 2017 | 19 | 2017 |
The ANTAREX domain specific language for high performance computing C Silvano, G Agosta, A Bartolini, AR Beccari, L Benini, L Besnard, J Bispo, ... Microprocessors and Microsystems 68, 58-73, 2019 | 17 | 2019 |
SOCRATES—A seamless online compiler and system runtime autotuning framework for energy-aware applications D Gadioli, R Nobre, P Pinto, E Vitali, AH Ashouri, G Palermo, J Cardoso, ... 2018 Design, Automation & Test in Europe Conference & Exhibition (DATE …, 2018 | 17 | 2018 |
Understanding the I/O impact on the performance of high-throughput molecular docking S Markidis, D Gadioli, E Vitali, G Palermo 2021 IEEE/ACM Sixth International Parallel Data Systems Workshop (PDSW), 9-14, 2021 | 15 | 2021 |
EXSCALATE: An extreme-scale virtual screening platform for drug discovery targeting polypharmacology to fight SARS-CoV-2 D Gadioli, E Vitali, F Ficarelli, C Latini, C Manelfi, C Talarico, C Silvano, ... IEEE Transactions on Emerging Topics in Computing 11 (1), 170-181, 2022 | 14 | 2022 |
Tunable approximations to control time-to-solution in an HPC molecular docking Mini-App D Gadioli, G Palermo, S Cherubin, E Vitali, G Agosta, C Manelfi, ... The Journal of Supercomputing 77, 841-869, 2021 | 14 | 2021 |
Autotuning and adaptivity in energy efficient HPC systems: the ANTAREX toolbox C Silvano, G Palermo, G Agosta, AH Ashouri, D Gadioli, S Cherubin, ... Proceedings of the 15th ACM International Conference on Computing Frontiers …, 2018 | 13 | 2018 |
Accelerating a geometric approach to molecular docking with OpenACC E Vitali, D Gadioli, G Palermo, A Beccari, C Silvano Proceedings of the 6th International Workshop on Parallelism in …, 2018 | 11 | 2018 |
Antarex: A dsl-based approach to adaptively optimizing and enforcing extra-functional properties in high performance computing C Silvano, G Agosta, A Bartolini, AR Beccari, L Benini, L Besnard, J Bispo, ... 2018 21st Euromicro Conference on Digital System Design (DSD), 600-607, 2018 | 9 | 2018 |
Candida Manelfi, Carmine Talarico, Cristina Silvano, Carlo Cavazzoni, Gianluca Palermo, and Andrea Rosario Beccari. 2023. EXSCALATE: An Extreme-Scale Virtual Screening Platform … D Gadioli, E Vitali, F Ficarelli, C Latini IEEE Transactions on Emerging Topics in Computing 11 (1), 170-181, 2023 | 7 | 2023 |
MEDIATE-Molecular DockIng at homE: Turning collaborative simulations into therapeutic solutions G Vistoli, C Manelfi, C Talarico, A Fava, A Warshel, IV Tetko, R Apostolov, ... Expert Opinion on Drug Discovery 18 (8), 821-833, 2023 | 6 | 2023 |
Towards a portable drug discovery pipeline with SYCL 2020 L Crisci, M Salimi Beni, B Cosenza, N Scipione, D Gadioli, E Vitali, ... Proceedings of the 10th International Workshop on OpenCL, 1-2, 2022 | 6 | 2022 |
EXSCALATE: An extreme-scale in-silico virtual screening platform to evaluate 1 trillion compounds in 60 hours on 81 PFLOPS supercomputers D Gadioli, E Vitali, F Ficarelli, C Latini, C Manelfi, C Talarico, C Silvano, ... arXiv preprint arXiv:2110.11644, 2021 | 6 | 2021 |
Tunable and portable extreme-scale drug discovery platform at exascale: the lIGATE approach G Palermo, G Accordi, D Gadioli, E Vitali, C Silvano, B Guindani, ... Proceedings of the 20th ACM International Conference on Computing Frontiers …, 2023 | 5 | 2023 |
Parametric throughput oriented large integer multipliers for high level synthesis E Vitali, D Gadioli, F Ferrandi, G Palermo 2021 Design, Automation & Test in Europe Conference & Exhibition (DATE), 38-41, 2021 | 5 | 2021 |