A global metagenomic map of urban microbiomes and antimicrobial resistance D Danko, D Bezdan, EE Afshin, S Ahsanuddin, C Bhattacharya, DJ Butler, ... Cell 184 (13), 3376-3393. e17, 2021 | 279* | 2021 |
Biosynthetic potential of the global ocean microbiome L Paoli, HJ Ruscheweyh, CC Forneris, F Hubrich, S Kautsar, A Bhushan, ... Nature 607 (7917), 111-118, 2022 | 221 | 2022 |
Blind prediction of homo‐and hetero‐protein complexes: The CASP13‐CAPRI experiment MF Lensink, G Brysbaert, N Nadzirin, S Velankar, RAG Chaleil, T Gerguri, ... Proteins: Structure, Function, and Bioinformatics 87 (12), 1200-1221, 2019 | 125 | 2019 |
Communication-efficient jaccard similarity for high-performance distributed genome comparisons M Besta, R Kanakagiri, H Mustafa, M Karasikov, G Rätsch, T Hoefler, ... 2020 IEEE International Parallel and Distributed Processing Symposium (IPDPS …, 2020 | 86 | 2020 |
Smooth orientation-dependent scoring function for coarse-grained protein quality assessment M Karasikov, G Pagès, S Grudinin Bioinformatics 35 (16), 2801-2808, 2019 | 68 | 2019 |
Metagraph: Indexing and analysing nucleotide archives at petabase-scale M Karasikov, H Mustafa, D Danciu, C Barber, M Zimmermann, G Rätsch, ... BioRxiv, 2020.10. 01.322164, 2020 | 57 | 2020 |
Assessment of chemical‐crosslink‐assisted protein structure modeling in CASP13 JE Fajardo, R Shrestha, N Gil, A Belsom, SN Crivelli, C Czaplewski, ... Proteins: Structure, Function, and Bioinformatics 87 (12), 1283-1297, 2019 | 31 | 2019 |
Dynamic compression schemes for graph coloring H Mustafa, I Schilken, M Karasikov, C Eickhoff, G Rätsch, A Kahles Bioinformatics 35 (3), 407-414, 2019 | 27 | 2019 |
Lossless indexing with counting de Bruijn graphs M Karasikov, H Mustafa, G Rätsch, A Kahles Genome Research 32 (9), 1754-1764, 2022 | 25 | 2022 |
Sparse binary relation representations for genome graph annotation M Karasikov, H Mustafa, A Joudaki, S Javadzadeh-No, G Rätsch, ... Journal of Computational Biology, 2020 | 23 | 2020 |
Классификация временных рядов в пространстве параметров порождающих моделей МЕ Карасиков, ВВ Стрижов Информатика и её применения 10 (4), 121-131, 2016 | 12* | 2016 |
Поиск эффективных методов снижения размерности при решении задач многоклассовой классификации путем её сведения к решению бинарных задач МЕ Карасиков, ЮВ Максимов Машинное обучение и анализ данных 1 (9), 1273-1290, 2014 | 10* | 2014 |
Chauvot de Beauchêne I MF Lensink, G Brysbaert, N Nadzirin, S Velankar, RAG Chaleil, T Gerguri, ... Maigret, B, 1200-1221, 2019 | 8 | 2019 |
Metannot: A succinct data structure for compression of colors in dynamic de Bruijn graphs H Mustafa, A Kahles, M Karasikov, G Rätsch BioRxiv, 236711, 2017 | 8 | 2017 |
Topology-based sparsification of graph annotations D Danciu, M Karasikov, H Mustafa, A Kahles, G Rätsch Bioinformatics 37 (Supplement_1), i169-i176, 2021 | 7 | 2021 |
MetaGraph-MLA: Label-guided alignment to variable-order De Bruijn graphs H Mustafa, M Karasikov, G Rätsch, A Kahles bioRxiv, 2022.11. 04.514718, 2022 | 4 | 2022 |
Inverse protein folding problem via quadratic programming A Riazanov, M Karasikov, S Grudinin arXiv preprint arXiv:1701.00673, 2017 | 3 | 2017 |
Towards Large-Scale Training of Pathology Foundation Models N Aben, ED de Jong, I Gatopoulos, N Känzig, M Karasikov, A Lagré, ... arXiv preprint arXiv:2404.15217, 2024 | 2 | 2024 |
Прогнозирование структур белков методами полуопределенного программирования АС Подкопаев, МЕ Карасиков, ЮВ Максимов Труды Московского физико-технического института 7 (4 (28)), 66-73, 2015 | 2 | 2015 |
Label-guided seed-chain-extend alignment on annotated De Bruijn graphs H Mustafa, M Karasikov, N Mansouri Ghiasi, G Rätsch, A Kahles Bioinformatics 40 (Supplement_1), i337-i346, 2024 | 1 | 2024 |