Vipin T. Sreedharan
Vipin T. Sreedharan
PhD student at Memorial Sloan Kettering Cancer Center/ University of Tübingen
Bestätigte E-Mail-Adresse bei
Zitiert von
Zitiert von
Multiple reference genomes and transcriptomes for Arabidopsis thaliana
X Gan, O Stegle, J Behr, JG Steffen, P Drewe, KL Hildebrand, R Lyngsoe, ...
Nature 477 (7365), 419-423, 2011
A spatial and temporal map of C. elegans gene expression
WC Spencer, G Zeller, JD Watson, SR Henz, KL Watkins, RD McWhirter, ...
Genome research 21 (2), 325-341, 2011
RiboDiff: detecting changes of mRNA translation efficiency from ribosome footprints
Y Zhong, T Karaletsos, P Drewe, VT Sreedharan, D Kuo, K Singh, ...
Bioinformatics 33 (1), 139-141, 2017
Prediction of potent shRNAs with a sequential classification algorithm
R Pelossof, L Fairchild, CH Huang, C Widmer, VT Sreedharan, N Sinha, ...
Nature biotechnology 35 (4), 350-353, 2017
The Tumor Profiler Study: integrated, multi-omic, functional tumor profiling for clinical decision support
A Irmisch, X Bonilla, S Chevrier, KV Lehmann, F Singer, NC Toussaint, ...
Cancer Cell 39 (3), 288-293, 2021
RNA‐Seq read alignments with PALMapper
G Jean, A Kahles, VT Sreedharan, FD Bona, G Rätsch
Current protocols in bioinformatics 32 (1), 11.6. 1-11.6. 37, 2010
MITIE: Simultaneous RNA-Seq-based transcript identification and quantification in multiple samples
J Behr, A Kahles, Y Zhong, VT Sreedharan, P Drewe, G Rätsch
Bioinformatics 29 (20), 2529-2538, 2013
Cohesin rings devoid of Scc3 and Pds5 maintain their stable association with the DNA
I Kulemzina, MR Schumacher, V Verma, J Reiter, J Metzler, AV Failla, ...
Public Library of Science 8 (8), e1002856, 2012
Oqtans: the RNA-seq workbench in the cloud for complete and reproducible quantitative transcriptome analysis
VT Sreedharan, SJ Schultheiss, G Jean, A Kahles, R Bohnert, P Drewe, ...
Bioinformatics 30 (9), 1300-1301, 2014
AspAlt: A tool for inter-database, inter-genomic and user-specific comparative analysis of alternative transcription and alternative splicing in 46 eukaryotes
A Bhasi, P Philip, VT Sreedharan, P Senapathy
Genomics 94 (1), 48-54, 2009
Oqtans: a Galaxy-integrated workflow for quantitative transcriptome analysis from NGS Data
SJ Schultheiss, G Jean, J Behr, R Bohnert, P Drewe, N Görnitz, A Kahles, ...
BMC Bioinformatics 12, 1-2, 2011
Framework for Multi-task Multiple Kernel Learning and Applications in Genome Analysis
C Widmer, M Kloft, VT Sreedharan, G Rätsch
arXiv preprint arXiv:1506.09153, 2015
CIViCutils: Matching and downstream processing of clinical annotations from CIViC
ML Rosano-Gonzalez, VT Sreedharan, A Hanns, DJ Stekhoven, F Singer
F1000Research 12, 1304, 2023
Oqtans: a multifunctional workbench for RNA-seq data analysis
VT Sreedharan, SJ Schultheiss, G Jean, A Kahles, R Bohnert, P Drewe, ...
BMC Bioinformatics 15 (3), 1-2, 2014
The Role of Cohesin Associated Factors, Pds5, Scc3, and Wpl1 during Cohesion Establishmentand Maintenance in Budding Yeast
I Kulemzina
Universität Tübingen, 2012
Multiple reference genomes and transcriptomes for Arabidopsis thaliana.
GXC Gan XiangChao, O Stegle, J Behr, JG Steffen, P Drewe, ...
Accurate Sequencing of 18 Genomes of Arabidopsis thaliana and Its Use in Imputing the Genome Sequences of Over 600 MAGIC Recombinant Inbred Lines
X Gan, J Behr, J Steffen, K Hildebrand, L Allchin, L Goodstadt, O Stegle, ...
Extensive Genomic and Transcriptomic Variation in the 19 Founders of the Arabidopsis MAGIC Lines
J Steffen, J Behr, P Drewe, K Hillebrand, P Kover, R Lyngsoe, R Mott, ...
22nd International Conference on Arabidopsis Research (ICAR 2011), 190, 2011
characteristic hinge angles. J. Cell Biol. 156, 419–424. 11. Skibbens, RV (2011). Sticking a fork in cohesin–it’s not done yet! Trends Genet. 27, 499–506.
J Reiter, J Metzler, AV Failla, C Lanz, VT Sreedharan, G Rätsch, D Ivanov
Trans. R. Soc. Lond. B Biol. Sci 360, 537-542, 2007
Reproducible Quantitative Transcriptome Analysis with
VT Sreedharan, SJ Schultheiss, G Jean, A Kahles, P Drewe, R Bohnert, ...
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