| Widespread transcription at neuronal activity-regulated enhancers TK Kim, M Hemberg, JM Gray, AM Costa, DM Bear, J Wu, DA Harmin, ... Nature 465 (7295), 182-187, 2010 | 2670 | 2010 |
| The human cell atlas A Regev, SA Teichmann, ES Lander, I Amit, C Benoist, E Birney, ... elife 6, e27041, 2017 | 2149 | 2017 |
| SC3: consensus clustering of single-cell RNA-seq data VY Kiselev, K Kirschner, MT Schaub, T Andrews, A Yiu, T Chandra, ... Nature methods 14 (5), 483-486, 2017 | 1387 | 2017 |
| Transcriptome-wide noise controls lineage choice in mammalian progenitor cells HH Chang, M Hemberg, M Barahona, DE Ingber, S Huang Nature 453 (7194), 544-547, 2008 | 1257 | 2008 |
| Challenges in unsupervised clustering of single-cell RNA-seq data VY Kiselev, TS Andrews, M Hemberg Nature Reviews Genetics 20 (5), 273-282, 2019 | 997 | 2019 |
| Temporal tracking of microglia activation in neurodegeneration at single-cell resolution H Mathys, C Adaikkan, F Gao, JZ Young, E Manet, M Hemberg, ... Cell reports 21 (2), 366-380, 2017 | 653 | 2017 |
| scmap: projection of single-cell RNA-seq data across data sets VY Kiselev, A Yiu, M Hemberg Nature methods 15 (5), 359-362, 2018 | 581 | 2018 |
| Disruption of DNA-methylation-dependent long gene repression in Rett syndrome HW Gabel, B Kinde, H Stroud, CS Gilbert, DA Harmin, NR Kastan, ... Nature 522 (7554), 89-93, 2015 | 569 | 2015 |
| Genome-wide analysis of MEF2 transcriptional program reveals synaptic target genes and neuronal activity-dependent polyadenylation site selection SW Flavell, TK Kim, JM Gray, DA Harmin, M Hemberg, EJ Hong, ... Neuron 60 (6), 1022-1038, 2008 | 523 | 2008 |
| Tau promotes neurodegeneration through global chromatin relaxation B Frost, M Hemberg, J Lewis, MB Feany Nature neuroscience 17 (3), 357-366, 2014 | 465 | 2014 |
| Trophic levels and trophic tangles: the prevalence of omnivory in real food webs RM Thompson, M Hemberg, BM Starzomski, JB Shurin Ecology 88 (3), 612-617, 2007 | 384 | 2007 |
| Astrocyte layers in the mammalian cerebral cortex revealed by a single-cell in situ transcriptomic map OA Bayraktar, T Bartels, S Holmqvist, V Kleshchevnikov, A Martirosyan, ... Nature neuroscience 23 (4), 500-509, 2020 | 378 | 2020 |
| Genome-wide activity-dependent MeCP2 phosphorylation regulates nervous system development and function S Cohen, HW Gabel, M Hemberg, AN Hutchinson, LA Sadacca, DH Ebert, ... Neuron 72 (1), 72-85, 2011 | 333 | 2011 |
| Souporcell: robust clustering of single-cell RNA-seq data by genotype without reference genotypes H Heaton, AM Talman, A Knights, M Imaz, DJ Gaffney, R Durbin, ... Nature methods 17 (6), 615-620, 2020 | 311 | 2020 |
| Identifying cell populations with scRNASeq TS Andrews, M Hemberg Molecular aspects of medicine 59, 114-122, 2018 | 296 | 2018 |
| Genome-wide identification and characterization of functional neuronal activity–dependent enhancers AN Malik, T Vierbuchen, M Hemberg, AA Rubin, E Ling, CH Couch, ... Nature neuroscience 17 (10), 1330-1339, 2014 | 284 | 2014 |
| M3Drop: dropout-based feature selection for scRNASeq TS Andrews, M Hemberg Bioinformatics 35 (16), 2865-2867, 2019 | 267 | 2019 |
| Tutorial: guidelines for the computational analysis of single-cell RNA sequencing data TS Andrews, VY Kiselev, D McCarthy, M Hemberg Nature protocols 16 (1), 1-9, 2021 | 262 | 2021 |
| The Malaria Cell Atlas: Single parasite transcriptomes across the complete Plasmodium life cycle VM Howick, AJC Russell, T Andrews, H Heaton, AJ Reid, K Natarajan, ... Science 365 (6455), eaaw2619, 2019 | 229 | 2019 |
| Enhancer RNAs: a class of long noncoding RNAs synthesized at enhancers TK Kim, M Hemberg, JM Gray Cold Spring Harbor perspectives in biology 7 (1), a018622, 2015 | 216 | 2015 |
