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Ching-Tai Chen
Ching-Tai Chen
Department of Bioinformatics and Medical Engineering, Asia University
Bestätigte E-Mail-Adresse bei asia.edu.tw
Titel
Zitiert von
Zitiert von
Jahr
An expanded evaluation of protein function prediction methods shows an improvement in accuracy
Y Jiang, TR Oron, WT Clark, AR Bankapur, DD Andrea, R Lepore, ...
Genome Biology 17 (184), 2016
4372016
Proteogenomics of Non-smoking Lung Cancer in East Asia Delineates Molecular Signatures of Pathogenesis and Progression
YJ Chen, TI Roumeliotis, YH Chang, CT Chen, CL Han, MH Lin, ...
Cell 182 (1), 226-244. e17, 2020
2632020
N-GlyDE: a two-stage N-linked glycosylation site prediction incorporating gapped dipeptides and pattern-based encoding
T Pitti, CT Chen, HN Lin, WK Choong, WL Hsu, TY Sung
Scientific reports 9 (1), 15975, 2019
722019
Rationalization and design of the complementarity determining region sequences in an antibody-antigen recognition interface
CM Yu, HP Peng, C Chen, YC Lee, JB Chen, KC Tsai, CT Chen, ...
PLoS One 7 (3), e33340, 2012
612012
Protein subcellular localization prediction of eukaryotes using a knowledge-based approach
HN Lin, CT Chen, TY Sung, SY Ho, WL Hsu
BMC bioinformatics 10, 1-13, 2009
562009
Protein-protein interaction site predictions with three-dimensional probability distributions of interacting atoms on protein surfaces
CT Chen, HP Peng, JW Jian, KC Tsai, JY Chang, EW Yang, JB Chen, ...
PloS one 7 (6), e37706, 2012
372012
MS2CNN: predicting MS/MS spectrum based on protein sequence using deep convolutional neural networks
YM Lin, CT Chen, JM Chang
BMC genomics 20, 1-10, 2019
362019
Prediction of carbohydrate binding sites on protein surfaces with 3-dimensional probability density distributions of interacting atoms
KC Tsai, JW Jian, EW Yang, PC Hsu, HP Peng, CT Chen, JB Chen, ...
PloS one 7 (7), e40846, 2012
322012
iMet-Q: a user-friendly tool for label-free metabolomics quantitation using dynamic peak-width determination
HY Chang, CT Chen, TM Lih, KS Lynn, CG Juo, WL Hsu, TY Sung
PloS one 11 (1), e0146112, 2016
272016
Protease substrate site predictors derived from machine learning on multilevel substrate phage display data
CT Chen, EW Yang, HJ Hsu, YK Sun, WL Hsu, AS Yang
Bioinformatics 24 (23), 2691-2697, 2008
212008
MAGIC-web: a platform for untargeted and targeted N-linked glycoprotein identification
TM Lih, WK Choong, CC Chen, CW Cheng, HN Lin, CT Chen, HY Chang, ...
Nucleic acids research 44 (W1), W575-W580, 2016
152016
Informatics view on the challenges of identifying missing proteins from shotgun proteomics
WK Choong, HY Chang, CT Chen, CF Tsai, WL Hsu, YJ Chen, TY Sung
Journal of proteome research 14 (12), 5396-5407, 2015
152015
Adaptive learning environment to meet pedagogical needs
JM Su, SS Tseng, CT Chen, WN Tsai
Journal of information science and engineering 20 (6), 1057-1077, 2004
102004
Calibr improves spectral library search for spectrum-centric analysis of data independent acquisition proteomics
JH Wang, WK Choong, CT Chen, TY Sung
Scientific Reports 12 (1), 2045, 2022
82022
WinProphet: a user-friendly pipeline management system for proteomics data analysis based on Trans-Proteomic Pipeline
CT Chen, CL Ko, WK Choong, JH Wang, WL Hsu, TY Sung
Analytical chemistry 91 (15), 9403-9406, 2019
82019
HYPLOSP: a knowledge-based approach to protein local structure prediction
CT Chen, HN Lin, TY Sung, WL Hsu
Journal of bioinformatics and computational biology 4 (06), 1287-1307, 2006
82006
Unlocking the secrets behind advanced artificial intelligence language models in deidentifying Chinese-English mixed clinical text: Development and validation study
YQ Lee, CT Chen, CC Chen, CH Lee, P Chen, CS Wu, HJ Dai
Journal of Medical Internet Research 26, e48443, 2024
72024
N-GlyDE: a two-stage N-linked glycosylation site prediction incorporating gapped dipeptides and pattern-based encoding. Sci Rep 9: 15975
TP Itti, CT Chen, HN Lin, WK Choong, WL Hsu, TY Sung
52019
Multi-Q 2 software facilitates isobaric labeling quantitation analysis with improved accuracy and coverage
CT Chen, JH Wang, CW Cheng, WC Hsu, CL Ko, WK Choong, TY Sung
Scientific reports 11 (1), 2233, 2021
42021
iHPDM: In Silico Human Proteome Digestion Map with Proteolytic Peptide Analysis and Graphical Visualizations
WK Choong, CT Chen, JH Wang, TY Sung
Journal of proteome research 18 (12), 4124-4132, 2019
42019
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