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Philipp Drewe-Boss
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Determination and Inference of Eukaryotic Transcription Factor Sequence Specificity
MT Weirauch, A Yang, M Albu, AG Cote, A Montenegro-Montero, P Drewe, ...
Cell 158 (6), 1431-1443, 2014
15742014
Multiple reference genomes and transcriptomes for Arabidopsis thaliana
X Gan, O Stegle, J Behr, JG Steffen, P Drewe, KL Hildebrand, R Lyngsoe, ...
Nature 477 (7365), 419-423, 2011
7252011
RNA G-quadruplexes cause eIF4A-dependent oncogene translation in cancer
AL Wolfe, K Singh, Y Zhong, P Drewe, VK Rajasekhar, VR Sanghvi, ...
Nature 513 (7516), 65-70, 2014
6092014
DNA methylation in Arabidopsis has a genetic basis and shows evidence of local adaptation
MJ Dubin, P Zhang, D Meng, MS Remigereau, EJ Osborne, FP Casale, ...
ELife 4, e05255, 2015
4592015
Nonsense-mediated decay of alternative precursor mRNA splicing variants is a major determinant of the Arabidopsis steady state transcriptome
G Drechsel, A Kahles, AK Kesarwani, E Stauffer, J Behr, P Drewe, ...
The Plant Cell 25 (10), 3726-3742, 2013
2152013
RiboDiff: detecting changes of mRNA translation efficiency from ribosome footprints
Y Zhong, T Karaletsos, P Drewe, VT Sreedharan, D Kuo, K Singh, ...
Bioinformatics 33 (1), 139-141, 2017
1472017
Determinants of robustness in spindle assembly checkpoint signalling
S Heinrich, EM Geissen, J Kamenz, S Trautmann, C Widmer, P Drewe, ...
Nature cell biology 15 (11), 1328-1339, 2013
1292013
Alternative splicing substantially diversifies the transcriptome during early photomorphogenesis and correlates with the energy availability in arabidopsis
L Hartmann, P Drewe-Boß, T Wießner, G Wagner, S Geue, HC Lee, ...
The Plant Cell 28 (11), 2715-2734, 2016
792016
MITIE: Simultaneous RNA-Seq-based transcript identification and quantification in multiple samples
J Behr, A Kahles, Y Zhong, VT Sreedharan, P Drewe, G Rätsch
Bioinformatics 29 (20), 2529-2538, 2013
712013
Accurate detection of differential RNA processing
P Drewe, O Stegle, L Hartmann, A Kahles, R Bohnert, A Wachter, ...
Nucleic acids research 41 (10), 5189-5198, 2013
552013
Spatio-temporal mRNA tracking in the early zebrafish embryo
K Holler, A Neuschulz, P Drewe-Boß, J Mintcheva, B Spanjaard, R Arsiè, ...
Nature communications 12 (1), 1-13, 2021
282021
Statistical tests for detecting differential RNA-transcript expression from read counts
O Stegle, P Drewe, R Bohnert, K Borgwardt, G Rätsch
Nat Precedings, 2010
272010
omniCLIP: probabilistic identification of protein-RNA interactions from CLIP-seq data
P Drewe-Boss, HH Wessels, U Ohler
Genome Biology 19 (1), 183, 2018
222018
Oqtans: the RNA-seq workbench in the cloud for complete and reproducible quantitative transcriptome analysis
VT Sreedharan, SJ Schultheiss, G Jean, A Kahles, R Bohnert, P Drewe, ...
Bioinformatics 30 (9), 1300-1301, 2014
182014
Cseq-simulator: a data simulator for CLIP-Seq experiments
W Kassuhn, U Ohler, P Drewe
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 21, 433, 2016
92016
Deep learning for prediction of population health costs
P Drewe-Boss, D Enders, J Walker, U Ohler
BMC Medical Informatics and Decision Making 22 (1), 1-10, 2022
82022
Expanding the map of protein-RNA interaction sites via cell fusion followed by PAR-CLIP
F Hinze, P Drewe-Boss, M Milek, U Ohler, M Landthaler, M Gotthardt
RNA biology 15 (3), 359-368, 2018
82018
Oqtans: a Galaxy-integrated workflow for quantitative transcriptome analysis from NGS Data.
SJ Schultheiss, G Jean, J Behr, R Bohnert, P Drewe, N Görnitz, A Kahles, ...
BMC Bioinformatics 12 (S-11), A7, 2011
62011
Using gradient boosting with stability selection on health insurance claims data to identify disease trajectories in chronic obstructive pulmonary disease
T Ploner, S Heß, M Grum, P Drewe-Boss, J Walker
Statistical Methods in Medical Research 29 (12), 3684-3694, 2020
52020
Multiple insert size paired-end sequencing for deconvolution of complex transcriptomes
LM Smith, L Hartmann, P Drewe, R Bohnert, A Kahles, C Lanz, G Rätsch
RNA biology 9 (5), 596-609, 2012
42012
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