| Mimir: Memory-efficient and scalable MapReduce for large supercomputing systems T Gao, Y Guo, B Zhang, P Cicotti, Y Lu, P Balaji, M Taufer 2017 IEEE international parallel and distributed processing symposium (IPDPS …, 2017 | 37 | 2017 |
| A scalable and accurate method for classifying protein–ligand binding geometries using a MapReduce approach T Estrada, B Zhang, P Cicotti, RS Armen, M Taufer Computers in biology and medicine 42 (7), 758-771, 2012 | 32 | 2012 |
| Enhancement of accuracy and efficiency for RNA secondary structure prediction by sequence segmentation and MapReduce B Zhang, DT Yehdego, KL Johnson, MY Leung, M Taufer BMC Structural Biology 13, 1-24, 2013 | 27 | 2013 |
| Enabling in-situ data analysis for large protein-folding trajectory datasets B Zhang, T Estrada, P Cicotti, M Taufer 2014 IEEE 28th International Parallel and Distributed Processing Symposium …, 2014 | 23 | 2014 |
| In situ data analytics and indexing of protein trajectories T Johnston, B Zhang, A Liwo, S Crivelli, M Taufer Journal of computational chemistry 38 (16), 1419-1430, 2017 | 20 | 2017 |
| On efficiently capturing scientific properties in distributed big data without moving the data: a case study in distributed structural biology using mapreduce B Zhang, T Estrada, P Cicotti, M Taufer 2013 IEEE 16th International Conference on Computational Science and …, 2013 | 11 | 2013 |
| Reengineering high-throughput molecular datasets for scalable clustering using MapReduce T Estrada, B Zhang, M Taufer, P Cicotti, R Armen 2012 IEEE 14th International Conference on High Performance Computing and …, 2012 | 10 | 2012 |
| Bandwidth modeling in large distributed systems for big data applications B Javadi, B Zhang, M Taufer 2014 15th International Conference on Parallel and Distributed Computing …, 2014 | 9 | 2014 |
| Accurate analysis of large datasets of protein-ligand binding geometries using advanced clustering methods T Estrada, B Zhang, P Cicotti, R Armen, M Taufer Computers in Biology and Medicine 42 (7), 758-771, 2012 | 8 | 2012 |
| Enabling scalable and accurate clustering of distributed ligand geometries on supercomputers B Zhang, T Estrada, P Cicotti, P Balaji, M Taufer Parallel Computing 63, 38-60, 2017 | 7 | 2017 |
| Secondary Structure Predictions for Long RNA Sequences Based on Inversion Excursions and MapReduce MYL Daniel Yehdego, Boyu Zhang, Vikram Kodimala, Kyle Twelfth IEEE International Workshop on High Performance Computational …, 2013 | 7* | 2013 |
| Accurate scoring of drug conformations at the extreme scale B Zhang, T Estrada, P Cicotti, P Balaji, M Taufer 2015 15th IEEE/ACM International Symposium on Cluster, Cloud and Grid …, 2015 | 6 | 2015 |
| Data storage and sharing for the long tail of science B Zhang, LC Pouchard, PM Smith, A Gasc, BC Pijanowski 2016 New York Scientific Data Summit (NYSDS), 1-9, 2016 | 5 | 2016 |
| Memory-efficient and skew-tolerant MapReduce over MPI for supercomputing systems T Gao, Y Guo, B Zhang, P Cicotti, Y Lu, P Balaji, M Taufer IEEE Transactions on Parallel and Distributed Systems 31 (12), 2734-2748, 2020 | 4 | 2020 |
| A modularized MapReduce framework to support RNA secondary structure prediction and analysis workflows B Zhang, DT Yehdego, KL Johnson, MY Leung, M Taufer 2012 IEEE International Conference on Bioinformatics and Biomedicine …, 2012 | 4 | 2012 |
| On the power of combiner optimizations in mapreduce over MPI workflows T Gao, Y Guo, B Zhang, P Cicotti, Y Lu, P Balaji, M Taufer 2018 IEEE 24th International Conference on Parallel and Distributed Systems …, 2018 | 3 | 2018 |
| Data storage and sharing for the long tail of science L Pouchard, B Zhang, P Smith, A Gasc, B Pijanowski New York Scientific Data Summit (NYSDS), 2016 | 3 | 2016 |
| Secondary structure predictions for long RNA sequences based on inversion excursions: preliminary results DT Yehdego, B Zhang, M Taufer, VKR Kodimala, R Vegesna, ... Proceedings of the ACM Conference on Bioinformatics, Computational Biology …, 2012 | 3 | 2012 |
| In-‐Situ Data Analysis of Protein-‐folding Trajectories M Taufer, T Johnston, B Zhang, A Liwo, S Crivelli ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 251, 2016 | | 2016 |
| In-situ Data Analysis of Protein Folding Trajectories T Johnston, B Zhang, A Liwo, S Crivelli, M Taufer arXiv preprint arXiv:1510.08789, 2015 | | 2015 |
